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Founder reconstruction enables scalable and seamless pangenomic analysis.
Tuukka Norri, Bastien Cazaux, Saska Dönges, Daniel Valenzuela, Veli Mäkinen: Founder reconstruction enables scalable and seamless pangenomic analysis. Bioinform. 37(24): 4611-4619 (2021)
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On Dynamic Bitvector Implementations.
Saska Dönges, Simon J. Puglisi, Rajeev Raman: On Dynamic Bitvector Implementations. DCC 2022: 252-261
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Simple Runs-Bounded FM-Index Designs Are Fast.
Diego Díaz-Domínguez, Saska Dönges, Simon J. Puglisi, Leena Salmela: Simple Runs-Bounded FM-Index Designs Are Fast. SEA 2023: 7:1-7:16
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